Setting up the work environment

-Register for an EBRAINS account, login, and set up a private collab.

-Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket.

-Give users Admin, Editor or Viewer rights by clicking Team in the navigation panel.

-Install Webwarp from the EBRAINS Collaboratory App Store.

1. To install Collaboratory Apps, click on the + Create button (top right corner).

2. Give the page a Title (for example, WebWarp), select the Community App option, and click Create.

3. Select the App to install (for example, WebWarp), and click Save and View.

4. Repeat this for all the relevant Community Apps.

5. Navigate between the Apps in the navigation panel. File transfer between the Apps is through the Bucket.

Conditions of use

Licence:

Source code: MIT License.

Citation of the tool:

-Puchades MA, et al. Comming soon!

Cite funding

WebWarp is developed at the Neural Systems Laboratory, Institute of Basic Medical Sciences,University of Oslo (Norway), with funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).

Citation of the atlases embedded in the tool:

WebAlign can be used with the following reference atlases:

Allen Mouse Brain Atlas version 3 2017 Waxholm Space Atlas of the Sprague Dawley rat v4

How to cite:

• Allen Mouse Brain Atlas (@ 2004 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available from:

http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/.

• Waxholm Space atlas of the Sprague Dawley rat brain

version 1.01,2,3 and 4 (RRID: SCR_017124; Papp et al.,NeuroImage 97, 374-386, 2014; Papp et al., NeuroImage 105, 561–562, 2015; Kjonigsen et al., NeuroImage 108, 441-449, 2015; Osen et al., NeuroImage 199, 38-56, 2019; Kleven et al., in preparation)

For reuse of the Waxholm Space atlas of the Sprague Dawley rat brain,see citation policy at https://www.nitrc.org/citation/?group_id=1081